Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RTFDC1Q9BY42 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTFDC1Q9BY42 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTFDC1Q9BY42 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 AC007274.1-201ENST00000439805 662 ntBASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 AL008721.1-201ENST00000609964 604 ntBASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTFDC1Q9BY42 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 CYP2A7P1-201ENST00000595391 815 ntBASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.46■□□□□ 0.87
RTFDC1Q9BY42 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 AL359881.2-201ENST00000602973 570 ntBASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 AC003101.2-201ENST00000612557 442 ntBASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 LINC00896-202ENST00000609602 2128 ntBASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RTFDC1Q9BY42 KRT8P49-201ENST00000604166 1432 ntBASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 AC009407.1-201ENST00000568958 598 ntBASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 AC004233.3-201ENST00000607794 1269 ntBASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.44■□□□□ 0.86
RTFDC1Q9BY42 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms