Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 STOM-202ENST00000347359 870 ntTSL 2 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 EGFEM1P-202ENST00000431685 1563 ntBASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 AGGF1P2-201ENST00000426656 2106 ntBASIC20.6■□□□□ 0.89
RPAP1Q9BWH6 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AP002472.1-201ENST00000577490 586 ntBASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AC106886.4-201ENST00000623557 2502 ntBASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 FAM58CP-201ENST00000435741 640 ntBASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 AC091812.2-201ENST00000619081 385 ntBASIC20.59■□□□□ 0.89
RPAP1Q9BWH6 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.58■□□□□ 0.89
RPAP1Q9BWH6 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RPAP1Q9BWH6 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms