Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC132938.5-201ENST00000624980 1813 ntBASIC15.29■□□□□ 0.04
USB1Q9BQ65 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 AL591424.1-201ENST00000442569 1213 ntBASIC15.29■□□□□ 0.04
USB1Q9BQ65 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 RPL13AP23-201ENST00000480739 586 ntBASIC15.29■□□□□ 0.04
USB1Q9BQ65 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 KRT18P58-201ENST00000527480 1120 ntBASIC15.29■□□□□ 0.04
USB1Q9BQ65 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 MIR7706-201ENST00000613747 67 ntBASIC15.29■□□□□ 0.04
USB1Q9BQ65 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 AC005593.1-201ENST00000624894 515 ntBASIC15.29■□□□□ 0.04
USB1Q9BQ65 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
USB1Q9BQ65 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USB1Q9BQ65 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.28■□□□□ 0.04
USB1Q9BQ65 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 BX005266.1-201ENST00000473402 457 ntBASIC15.28■□□□□ 0.04
USB1Q9BQ65 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 AL118508.1-201ENST00000613502 2345 ntBASIC15.28■□□□□ 0.04
USB1Q9BQ65 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 AC009336.1-201ENST00000608941 1553 ntBASIC15.28■□□□□ 0.04
USB1Q9BQ65 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USB1Q9BQ65 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.28■□□□□ 0.04
USB1Q9BQ65 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USB1Q9BQ65 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
USB1Q9BQ65 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
USB1Q9BQ65 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.27■□□□□ 0.04
USB1Q9BQ65 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
USB1Q9BQ65 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
USB1Q9BQ65 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.27■□□□□ 0.04
USB1Q9BQ65 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms