Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4CQ96CF2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 MIR1199-201ENST00000621445 119 ntBASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CHMP4CQ96CF2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 TNRC18P3-201ENST00000441896 2691 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 LINC00982-205ENST00000420957 435 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 KRT18P27-201ENST00000427733 1299 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 PRYP5-201ENST00000451909 266 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 KRT18P58-201ENST00000527480 1120 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 AC004706.3-202ENST00000621574 984 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 EGFEM1P-202ENST00000431685 1563 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 AL135999.2-201ENST00000622438 1686 ntBASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CHMP4CQ96CF2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CHMP4CQ96CF2 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms