Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 HCG24-202ENST00000414398 717 ntTSL 3 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 AP003733.1-201ENST00000491725 852 ntBASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 KRT8P26-201ENST00000534154 1276 ntBASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 AC079602.3-201ENST00000623931 403 ntBASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 PCDHA1-201ENST00000378133 2726 ntBASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 TSSC2-201ENST00000450217 709 ntBASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 AC078925.2-201ENST00000624013 1973 ntBASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
DEPDC4Q8N2C3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 TSPY22P-201ENST00000427496 604 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 ATP5G2P1-201ENST00000433580 426 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 SPDYE13P-201ENST00000445314 798 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 AC124947.2-201ENST00000547118 1133 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 AC092329.2-201ENST00000598402 547 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 AC024563.2-201ENST00000603282 481 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 AL513523.2-202ENST00000427283 2040 ntBASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
DEPDC4Q8N2C3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms