Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AL133373.2-201ENST00000623187 2828 ntBASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AKAP8P1-201ENST00000434743 1349 ntBASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AC092474.2-201ENST00000424288 719 ntBASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 RN7SL589P-201ENST00000481268 310 ntBASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AC068880.1-201ENST00000507289 2297 ntBASIC15.26■□□□□ 0.03
RNFT1Q5M7Z0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 SPCS2P4-201ENST00000436160 681 ntBASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 LINC01225-203ENST00000563550 1244 ntBASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 AL161645.1-201ENST00000622716 1255 ntBASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.25■□□□□ 0.03
RNFT1Q5M7Z0 CROCCP2-202ENST00000412962 2773 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 NOC2LP2-201ENST00000407594 1944 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 RNU1-129P-201ENST00000384064 167 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 HCG4-201ENST00000418983 998 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 AC109635.5-201ENST00000533593 962 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 AC091167.2-201ENST00000579581 588 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 U1.21-201ENST00000580816 167 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 Z92544.3-201ENST00000624747 417 ntBASIC15.24■□□□□ 0.03
RNFT1Q5M7Z0 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms