Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 AL031284.1-201ENST00000419297 478 ntBASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 TSPY22P-201ENST00000427496 604 ntBASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 AL157888.1-201ENST00000631930 593 ntBASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 AC116353.5-201ENST00000638148 1699 ntBASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 AC009154.2-201ENST00000621177 724 ntBASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 NORAD-201ENST00000565493 5339 ntBASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PDLIM3Q53GG5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 RPL13AP23-201ENST00000480739 586 ntBASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC074051.2-201ENST00000565115 352 ntBASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC092364.2-202ENST00000597012 1073 ntBASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC024563.2-201ENST00000603282 481 ntBASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms