Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 AC098818.2-201ENST00000564925 2320 ntBASIC17.75■□□□□ 0.43
CHD9Q3L8U1 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 USP32P1-208ENST00000506594 1164 ntBASIC17.75■□□□□ 0.43
CHD9Q3L8U1 PRYP6-201ENST00000514804 343 ntBASIC17.75■□□□□ 0.43
CHD9Q3L8U1 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AL035456.1-201ENST00000456064 1369 ntBASIC17.74■□□□□ 0.43
CHD9Q3L8U1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 ACTBP11-201ENST00000436287 1126 ntBASIC17.74■□□□□ 0.43
CHD9Q3L8U1 RN7SL828P-201ENST00000607615 303 ntBASIC17.74■□□□□ 0.43
CHD9Q3L8U1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 RNA5SP423-201ENST00000517127 109 ntBASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AC007431.3-201ENST00000623221 587 ntBASIC17.74■□□□□ 0.43
CHD9Q3L8U1 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AC009113.1-201ENST00000570267 2443 ntBASIC17.74■□□□□ 0.43
CHD9Q3L8U1 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CHD9Q3L8U1 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 AC044860.1-202ENST00000559481 777 ntBASIC17.73■□□□□ 0.43
CHD9Q3L8U1 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 KRT223P-202ENST00000449164 1292 ntBASIC17.73■□□□□ 0.43
CHD9Q3L8U1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.73■□□□□ 0.43
CHD9Q3L8U1 MIR8072-201ENST00000614241 80 ntBASIC17.73■□□□□ 0.43
CHD9Q3L8U1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CHD9Q3L8U1 AC011495.1-201ENST00000498085 584 ntBASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms