Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AL441883.1-201ENST00000566170 1045 ntBASIC19.14■□□□□ 0.65
TPM4P67936 AC005332.3-201ENST00000589904 676 ntBASIC19.14■□□□□ 0.65
TPM4P67936 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
TPM4P67936 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.14■□□□□ 0.65
TPM4P67936 GPR89P-201ENST00000407924 1495 ntBASIC19.14■□□□□ 0.65
TPM4P67936 LINC02199-201ENST00000506655 2702 ntBASIC19.14■□□□□ 0.65
TPM4P67936 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TPM4P67936 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TPM4P67936 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
TPM4P67936 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
TPM4P67936 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.13■□□□□ 0.65
TPM4P67936 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
TPM4P67936 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TPM4P67936 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.13■□□□□ 0.65
TPM4P67936 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.13■□□□□ 0.65
TPM4P67936 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.13■□□□□ 0.65
TPM4P67936 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.13■□□□□ 0.65
TPM4P67936 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.13■□□□□ 0.65
TPM4P67936 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
TPM4P67936 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TPM4P67936 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
TPM4P67936 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
TPM4P67936 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TPM4P67936 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC19.13■□□□□ 0.65
TPM4P67936 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
TPM4P67936 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.12■□□□□ 0.65
TPM4P67936 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TPM4P67936 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 TUBB8P12-201ENST00000308911 1335 ntBASIC19.12■□□□□ 0.65
TPM4P67936 TUBB7P-202ENST00000428444 1305 ntBASIC19.12■□□□□ 0.65
TPM4P67936 TUBB8P7-204ENST00000567960 1332 ntBASIC19.12■□□□□ 0.65
TPM4P67936 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 AC092597.1-201ENST00000487352 616 ntBASIC19.12■□□□□ 0.65
TPM4P67936 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.12■□□□□ 0.65
TPM4P67936 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.12■□□□□ 0.65
TPM4P67936 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TPM4P67936 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.12■□□□□ 0.65
TPM4P67936 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TPM4P67936 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TPM4P67936 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
TPM4P67936 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.11■□□□□ 0.65
TPM4P67936 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
TPM4P67936 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.11■□□□□ 0.65
TPM4P67936 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.11■□□□□ 0.65
TPM4P67936 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TPM4P67936 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.11■□□□□ 0.65
TPM4P67936 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.11■□□□□ 0.65
TPM4P67936 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.11■□□□□ 0.65
TPM4P67936 AL390719.2-201ENST00000606993 987 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms