Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
EPHB3P54753 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
EPHB3P54753 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.7■□□□□ 0.42
EPHB3P54753 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 PMS2P4-201ENST00000412466 1052 ntBASIC17.7■□□□□ 0.42
EPHB3P54753 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.7■□□□□ 0.42
EPHB3P54753 FAM86GP-201ENST00000448322 971 ntBASIC17.7■□□□□ 0.42
EPHB3P54753 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.7■□□□□ 0.42
EPHB3P54753 AL031055.1-201ENST00000606362 631 ntBASIC17.7■□□□□ 0.42
EPHB3P54753 AC093512.1-201ENST00000617969 520 ntBASIC17.7■□□□□ 0.42
EPHB3P54753 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
EPHB3P54753 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
EPHB3P54753 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
EPHB3P54753 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
EPHB3P54753 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
EPHB3P54753 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.69■□□□□ 0.42
EPHB3P54753 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 FRMD8P1-201ENST00000440433 1524 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 RNU1-129P-201ENST00000384064 167 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.69■□□□□ 0.42
EPHB3P54753 U1.21-201ENST00000580816 167 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 MPDU1-223ENST00000582151 728 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.69■□□□□ 0.42
EPHB3P54753 AC011467.4-201ENST00000594891 528 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
EPHB3P54753 KRT8P49-201ENST00000604166 1432 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.69■□□□□ 0.42
EPHB3P54753 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
EPHB3P54753 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
EPHB3P54753 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
EPHB3P54753 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.69■□□□□ 0.42
EPHB3P54753 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
EPHB3P54753 AC131009.4-201ENST00000624048 1740 ntBASIC17.69■□□□□ 0.42
EPHB3P54753 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.69■□□□□ 0.42
EPHB3P54753 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
EPHB3P54753 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
EPHB3P54753 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.68■□□□□ 0.42
EPHB3P54753 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
EPHB3P54753 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
EPHB3P54753 WASH6P-202ENST00000359512 1437 ntBASIC17.68■□□□□ 0.42
EPHB3P54753 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.68■□□□□ 0.42
EPHB3P54753 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.68■□□□□ 0.42
EPHB3P54753 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.68■□□□□ 0.42
EPHB3P54753 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.68■□□□□ 0.42
EPHB3P54753 AC069335.1-201ENST00000489972 472 ntBASIC17.68■□□□□ 0.42
EPHB3P54753 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.68■□□□□ 0.42
EPHB3P54753 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.68■□□□□ 0.42
EPHB3P54753 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms