Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.54■□□□□ 0.24
PDX1P52945 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.54■□□□□ 0.24
PDX1P52945 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PDX1P52945 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PDX1P52945 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PDX1P52945 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
PDX1P52945 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.53■□□□□ 0.24
PDX1P52945 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 MIR770-201ENST00000390219 98 ntBASIC16.53■□□□□ 0.24
PDX1P52945 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PDX1P52945 ADH5P3-201ENST00000433842 1137 ntBASIC16.53■□□□□ 0.24
PDX1P52945 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PDX1P52945 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.53■□□□□ 0.24
PDX1P52945 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
PDX1P52945 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.53■□□□□ 0.24
PDX1P52945 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.53■□□□□ 0.24
PDX1P52945 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.53■□□□□ 0.24
PDX1P52945 AC133963.1-201ENST00000504166 1679 ntBASIC16.53■□□□□ 0.24
PDX1P52945 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDX1P52945 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
PDX1P52945 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 LINC00304-203ENST00000565008 1864 ntBASIC16.52■□□□□ 0.24
PDX1P52945 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.52■□□□□ 0.24
PDX1P52945 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.52■□□□□ 0.24
PDX1P52945 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.52■□□□□ 0.24
PDX1P52945 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.52■□□□□ 0.24
PDX1P52945 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PDX1P52945 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.52■□□□□ 0.24
PDX1P52945 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.52■□□□□ 0.24
PDX1P52945 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.52■□□□□ 0.24
PDX1P52945 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
PDX1P52945 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.52■□□□□ 0.24
PDX1P52945 FAM8A3P-201ENST00000427218 844 ntBASIC16.52■□□□□ 0.24
PDX1P52945 FAM185BP-201ENST00000443595 716 ntBASIC16.52■□□□□ 0.24
PDX1P52945 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.52■□□□□ 0.24
PDX1P52945 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.52■□□□□ 0.24
PDX1P52945 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.52■□□□□ 0.24
PDX1P52945 AC004835.2-201ENST00000603762 682 ntBASIC16.52■□□□□ 0.24
PDX1P52945 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PDX1P52945 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDX1P52945 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDX1P52945 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.52■□□□□ 0.23
PDX1P52945 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.52■□□□□ 0.23
PDX1P52945 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PDX1P52945 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.52■□□□□ 0.23
PDX1P52945 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.52■□□□□ 0.23
PDX1P52945 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
PDX1P52945 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDX1P52945 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PDX1P52945 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PDX1P52945 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 REXO1L11P-201ENST00000620964 1927 ntBASIC16.51■□□□□ 0.23
PDX1P52945 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms