Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL5A3P25940 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC21.12■□□□□ 0.97
COL5A3P25940 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC21.12■□□□□ 0.97
COL5A3P25940 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.12■□□□□ 0.97
COL5A3P25940 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL5A3P25940 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
COL5A3P25940 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL5A3P25940 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC21.11■□□□□ 0.97
COL5A3P25940 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC21.11■□□□□ 0.97
COL5A3P25940 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC21.11■□□□□ 0.97
COL5A3P25940 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL5A3P25940 AC017083.2-201ENST00000608069 979 ntBASIC21.11■□□□□ 0.97
COL5A3P25940 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC21.11■□□□□ 0.97
COL5A3P25940 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 AC135050.7-201ENST00000624508 2218 ntBASIC21.11■□□□□ 0.97
COL5A3P25940 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL5A3P25940 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
COL5A3P25940 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
COL5A3P25940 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC21.1■□□□□ 0.97
COL5A3P25940 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC21.1■□□□□ 0.97
COL5A3P25940 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL5A3P25940 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC21.1■□□□□ 0.97
COL5A3P25940 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC21.1■□□□□ 0.97
COL5A3P25940 AC061975.2-201ENST00000581722 295 ntBASIC21.1■□□□□ 0.97
COL5A3P25940 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL5A3P25940 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 INE1-201ENST00000456273 945 ntBASIC21.09■□□□□ 0.97
COL5A3P25940 AC008494.3-201ENST00000606615 944 ntBASIC21.09■□□□□ 0.97
COL5A3P25940 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.09■□□□□ 0.97
COL5A3P25940 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC21.09■□□□□ 0.97
COL5A3P25940 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL5A3P25940 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.09■□□□□ 0.97
COL5A3P25940 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.09■□□□□ 0.97
COL5A3P25940 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL5A3P25940 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.09■□□□□ 0.97
COL5A3P25940 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC21.09■□□□□ 0.97
COL5A3P25940 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL5A3P25940 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.09■□□□□ 0.97
COL5A3P25940 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC21.09■□□□□ 0.97
COL5A3P25940 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC21.09■□□□□ 0.97
COL5A3P25940 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL5A3P25940 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL5A3P25940 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
COL5A3P25940 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL5A3P25940 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
COL5A3P25940 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 TUBB8P12-201ENST00000308911 1335 ntBASIC21.08■□□□□ 0.97
COL5A3P25940 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
COL5A3P25940 TUBB7P-202ENST00000428444 1305 ntBASIC21.08■□□□□ 0.97
COL5A3P25940 TUBB8P7-204ENST00000567960 1332 ntBASIC21.08■□□□□ 0.97
COL5A3P25940 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
COL5A3P25940 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.08■□□□□ 0.97
COL5A3P25940 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
COL5A3P25940 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC21.08■□□□□ 0.97
COL5A3P25940 AC055876.2-201ENST00000531834 546 ntBASIC21.08■□□□□ 0.97
COL5A3P25940 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL5A3P25940 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC21.08■□□□□ 0.97
COL5A3P25940 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms