Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.38■□□□□ 0.37
COL9A1P20849 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 ACTL9-202ENST00000612068 1252 ntBASIC17.38■□□□□ 0.37
COL9A1P20849 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL9A1P20849 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL9A1P20849 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL9A1P20849 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.37■□□□□ 0.37
COL9A1P20849 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
COL9A1P20849 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 AC108725.1-201ENST00000495472 409 ntBASIC17.37■□□□□ 0.37
COL9A1P20849 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC17.37■□□□□ 0.37
COL9A1P20849 AL390728.6-201ENST00000566446 1246 ntBASIC17.37■□□□□ 0.37
COL9A1P20849 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.37■□□□□ 0.37
COL9A1P20849 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.37■□□□□ 0.37
COL9A1P20849 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
COL9A1P20849 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 AL391825.1-201ENST00000457671 1364 ntBASIC17.37■□□□□ 0.37
COL9A1P20849 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
COL9A1P20849 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL9A1P20849 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL9A1P20849 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.36■□□□□ 0.37
COL9A1P20849 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.36■□□□□ 0.37
COL9A1P20849 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.36■□□□□ 0.37
COL9A1P20849 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.36■□□□□ 0.37
COL9A1P20849 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 ANKRD19P-201ENST00000338192 862 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.36■□□□□ 0.37
COL9A1P20849 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 MIR1247-201ENST00000408206 136 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.36■□□□□ 0.37
COL9A1P20849 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.36■□□□□ 0.37
COL9A1P20849 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.36■□□□□ 0.37
COL9A1P20849 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.36■□□□□ 0.37
COL9A1P20849 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.36■□□□□ 0.37
COL9A1P20849 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.36■□□□□ 0.37
COL9A1P20849 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.36■□□□□ 0.37
COL9A1P20849 AC008738.7-201ENST00000609744 511 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 AL139327.4-201ENST00000612362 153 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 AL021578.1-201ENST00000613646 709 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 AC015967.2-201ENST00000624092 234 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 AC006435.4-201ENST00000625037 234 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 AL356737.1-201ENST00000634391 234 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 TUBB1P2-201ENST00000422712 1306 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 TUBB1P1-201ENST00000503144 1300 ntBASIC17.36■□□□□ 0.37
COL9A1P20849 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL9A1P20849 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.36■□□□□ 0.37
COL9A1P20849 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.35■□□□□ 0.37
COL9A1P20849 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL9A1P20849 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL9A1P20849 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL9A1P20849 BOLA2P3-201ENST00000404566 256 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms