Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC17.17■□□□□ 0.34
VIMP08670 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.17■□□□□ 0.34
VIMP08670 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.16■□□□□ 0.34
VIMP08670 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 AL391256.1-201ENST00000443260 1855 ntBASIC17.16■□□□□ 0.34
VIMP08670 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.16■□□□□ 0.34
VIMP08670 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VIMP08670 PVRIG2P-201ENST00000435460 978 ntBASIC17.16■□□□□ 0.34
VIMP08670 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 AC002558.1-201ENST00000488906 803 ntBASIC17.16■□□□□ 0.34
VIMP08670 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 BX088651.1-201ENST00000540551 451 ntBASIC17.16■□□□□ 0.34
VIMP08670 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VIMP08670 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.16■□□□□ 0.34
VIMP08670 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VIMP08670 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.16■□□□□ 0.34
VIMP08670 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VIMP08670 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VIMP08670 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VIMP08670 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VIMP08670 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VIMP08670 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VIMP08670 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.15■□□□□ 0.34
VIMP08670 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 AC128676.1-201ENST00000454392 318 ntBASIC17.15■□□□□ 0.34
VIMP08670 AC112698.1-201ENST00000510299 916 ntBASIC17.15■□□□□ 0.34
VIMP08670 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.15■□□□□ 0.34
VIMP08670 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VIMP08670 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.15■□□□□ 0.34
VIMP08670 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VIMP08670 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VIMP08670 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.15■□□□□ 0.34
VIMP08670 AC126177.1-201ENST00000547829 2218 ntBASIC17.15■□□□□ 0.34
VIMP08670 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
VIMP08670 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
VIMP08670 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VIMP08670 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VIMP08670 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms