Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.18□□□□□ -0.14
CTSDP07339 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.18□□□□□ -0.14
CTSDP07339 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.18□□□□□ -0.14
CTSDP07339 AC140113.3-201ENST00000605663 199 ntBASIC14.18□□□□□ -0.14
CTSDP07339 AC073912.3-201ENST00000624414 853 ntBASIC14.18□□□□□ -0.14
CTSDP07339 AL023973.1-201ENST00000624619 620 ntBASIC14.18□□□□□ -0.14
CTSDP07339 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.18□□□□□ -0.14
CTSDP07339 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 ME2P1-201ENST00000426028 1970 ntBASIC14.18□□□□□ -0.14
CTSDP07339 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CTSDP07339 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CTSDP07339 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 AL513477.1-201ENST00000602865 2407 ntBASIC14.17□□□□□ -0.14
CTSDP07339 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 AC024909.3-201ENST00000611513 2257 ntBASIC14.17□□□□□ -0.14
CTSDP07339 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CTSDP07339 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.17□□□□□ -0.14
CTSDP07339 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CTSDP07339 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.17□□□□□ -0.14
CTSDP07339 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 MIR662-201ENST00000384847 95 ntBASIC14.17□□□□□ -0.14
CTSDP07339 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 HLA-J-202ENST00000469281 1241 ntBASIC14.17□□□□□ -0.14
CTSDP07339 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 AL138966.2-201ENST00000621997 464 ntBASIC14.17□□□□□ -0.14
CTSDP07339 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CTSDP07339 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 LINC01568-207ENST00000641790 1380 ntBASIC14.17□□□□□ -0.14
CTSDP07339 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.17□□□□□ -0.14
CTSDP07339 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.17□□□□□ -0.14
CTSDP07339 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CTSDP07339 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CTSDP07339 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 KRT8P10-201ENST00000450021 1447 ntBASIC14.16□□□□□ -0.14
CTSDP07339 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CTSDP07339 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.16□□□□□ -0.14
CTSDP07339 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CTSDP07339 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.16□□□□□ -0.14
CTSDP07339 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CTSDP07339 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC14.16□□□□□ -0.14
CTSDP07339 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.16□□□□□ -0.14
CTSDP07339 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 AL031432.5-201ENST00000641059 760 ntBASIC14.16□□□□□ -0.14
CTSDP07339 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CTSDP07339 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CTSDP07339 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms