Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.87■□□□□ 0.45
RB1P06400 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.87■□□□□ 0.45
RB1P06400 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RB1P06400 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RB1P06400 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.87■□□□□ 0.45
RB1P06400 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
RB1P06400 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.87■□□□□ 0.45
RB1P06400 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RB1P06400 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.87■□□□□ 0.45
RB1P06400 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RB1P06400 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 AC009477.1-201ENST00000452936 217 ntBASIC17.86■□□□□ 0.45
RB1P06400 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.86■□□□□ 0.45
RB1P06400 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.86■□□□□ 0.45
RB1P06400 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.86■□□□□ 0.45
RB1P06400 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.86■□□□□ 0.45
RB1P06400 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.86■□□□□ 0.45
RB1P06400 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RB1P06400 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.86■□□□□ 0.45
RB1P06400 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RB1P06400 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.85■□□□□ 0.45
RB1P06400 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.85■□□□□ 0.45
RB1P06400 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 AL353779.1-201ENST00000434793 351 ntBASIC17.85■□□□□ 0.45
RB1P06400 ATP5G2P4-201ENST00000442175 420 ntBASIC17.85■□□□□ 0.45
RB1P06400 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.85■□□□□ 0.45
RB1P06400 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.85■□□□□ 0.45
RB1P06400 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.85■□□□□ 0.45
RB1P06400 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.85■□□□□ 0.45
RB1P06400 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.85■□□□□ 0.45
RB1P06400 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
RB1P06400 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
RB1P06400 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RB1P06400 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
RB1P06400 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
RB1P06400 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RB1P06400 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
RB1P06400 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 EGFEM1P-202ENST00000431685 1563 ntBASIC17.84■□□□□ 0.45
RB1P06400 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.84■□□□□ 0.45
RB1P06400 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 AC087499.5-201ENST00000452760 1342 ntBASIC17.84■□□□□ 0.45
RB1P06400 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
RB1P06400 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RB1P06400 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.84■□□□□ 0.45
RB1P06400 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.84■□□□□ 0.45
RB1P06400 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms