Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.39■□□□□ 0.53
CHRNA1P02708 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.39■□□□□ 0.53
CHRNA1P02708 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHRNA1P02708 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CHRNA1P02708 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.39■□□□□ 0.53
CHRNA1P02708 CYP2A7P1-201ENST00000595391 815 ntBASIC18.39■□□□□ 0.53
CHRNA1P02708 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.39■□□□□ 0.53
CHRNA1P02708 MIR6080-201ENST00000617359 66 ntBASIC18.39■□□□□ 0.53
CHRNA1P02708 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.39■□□□□ 0.53
CHRNA1P02708 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHRNA1P02708 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.39■□□□□ 0.53
CHRNA1P02708 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CHRNA1P02708 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.39■□□□□ 0.53
CHRNA1P02708 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.39■□□□□ 0.53
CHRNA1P02708 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CHRNA1P02708 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.38■□□□□ 0.53
CHRNA1P02708 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.38■□□□□ 0.53
CHRNA1P02708 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 AC236430.1-201ENST00000402231 743 ntBASIC18.38■□□□□ 0.53
CHRNA1P02708 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.38■□□□□ 0.53
CHRNA1P02708 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.38■□□□□ 0.53
CHRNA1P02708 AC097493.3-201ENST00000509725 367 ntBASIC18.38■□□□□ 0.53
CHRNA1P02708 RN7SL204P-201ENST00000582831 262 ntBASIC18.38■□□□□ 0.53
CHRNA1P02708 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.38■□□□□ 0.53
CHRNA1P02708 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.38■□□□□ 0.53
CHRNA1P02708 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 AL021920.2-201ENST00000624828 1351 ntBASIC18.38■□□□□ 0.53
CHRNA1P02708 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.38■□□□□ 0.53
CHRNA1P02708 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHRNA1P02708 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.38■□□□□ 0.53
CHRNA1P02708 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CHRNA1P02708 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.37■□□□□ 0.53
CHRNA1P02708 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.37■□□□□ 0.53
CHRNA1P02708 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CHRNA1P02708 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.37■□□□□ 0.53
CHRNA1P02708 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.37■□□□□ 0.53
CHRNA1P02708 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.37■□□□□ 0.53
CHRNA1P02708 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 AC002472.2-201ENST00000442739 958 ntBASIC18.37■□□□□ 0.53
CHRNA1P02708 TSPY16P-201ENST00000449843 468 ntBASIC18.37■□□□□ 0.53
CHRNA1P02708 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.37■□□□□ 0.53
CHRNA1P02708 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.37■□□□□ 0.53
CHRNA1P02708 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.37■□□□□ 0.53
CHRNA1P02708 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.37■□□□□ 0.53
CHRNA1P02708 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 AL390754.1-201ENST00000619088 582 ntBASIC18.37■□□□□ 0.53
CHRNA1P02708 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.37■□□□□ 0.53
CHRNA1P02708 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.37■□□□□ 0.53
CHRNA1P02708 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.37■□□□□ 0.53
CHRNA1P02708 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
CHRNA1P02708 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CHRNA1P02708 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.37■□□□□ 0.53
CHRNA1P02708 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHRNA1P02708 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms