Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.65■□□□□ 0.74
COL2A1P02458 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.65■□□□□ 0.74
COL2A1P02458 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.65■□□□□ 0.74
COL2A1P02458 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.65■□□□□ 0.74
COL2A1P02458 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL2A1P02458 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.65■□□□□ 0.74
COL2A1P02458 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL2A1P02458 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 KRT8P39-201ENST00000396270 1433 ntBASIC19.64■□□□□ 0.74
COL2A1P02458 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL2A1P02458 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL2A1P02458 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL2A1P02458 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL2A1P02458 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.64■□□□□ 0.73
COL2A1P02458 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC19.64■□□□□ 0.73
COL2A1P02458 MRPS18AP1-201ENST00000414458 589 ntBASIC19.64■□□□□ 0.73
COL2A1P02458 AC241585.1-201ENST00000433527 519 ntBASIC19.64■□□□□ 0.73
COL2A1P02458 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.64■□□□□ 0.73
COL2A1P02458 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.64■□□□□ 0.73
COL2A1P02458 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.64■□□□□ 0.73
COL2A1P02458 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.64■□□□□ 0.73
COL2A1P02458 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.64■□□□□ 0.73
COL2A1P02458 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.64■□□□□ 0.73
COL2A1P02458 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
COL2A1P02458 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL2A1P02458 AC100757.3-201ENST00000622361 1406 ntBASIC19.64■□□□□ 0.73
COL2A1P02458 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.64■□□□□ 0.73
COL2A1P02458 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL2A1P02458 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.64■□□□□ 0.73
COL2A1P02458 GRAMD4P3-201ENST00000621665 1669 ntBASIC19.63■□□□□ 0.73
COL2A1P02458 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL2A1P02458 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.63■□□□□ 0.73
COL2A1P02458 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.63■□□□□ 0.73
COL2A1P02458 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.63■□□□□ 0.73
COL2A1P02458 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.63■□□□□ 0.73
COL2A1P02458 TSPY16P-201ENST00000449843 468 ntBASIC19.63■□□□□ 0.73
COL2A1P02458 TERF1P3-201ENST00000505638 1227 ntBASIC19.63■□□□□ 0.73
COL2A1P02458 AP002490.2-201ENST00000524791 560 ntBASIC19.63■□□□□ 0.73
COL2A1P02458 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.63■□□□□ 0.73
COL2A1P02458 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
COL2A1P02458 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.63■□□□□ 0.73
COL2A1P02458 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.63■□□□□ 0.73
COL2A1P02458 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.63■□□□□ 0.73
COL2A1P02458 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.63■□□□□ 0.73
COL2A1P02458 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL2A1P02458 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL2A1P02458 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL2A1P02458 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL2A1P02458 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL2A1P02458 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.62■□□□□ 0.73
COL2A1P02458 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 HLA-V-204ENST00000476601 1289 ntBASIC19.62■□□□□ 0.73
COL2A1P02458 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 BANF1P1-201ENST00000553684 263 ntBASIC19.62■□□□□ 0.73
COL2A1P02458 GPER1-207ENST00000619052 571 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 AC008761.3-201ENST00000624803 892 ntBASIC19.62■□□□□ 0.73
COL2A1P02458 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.62■□□□□ 0.73
COL2A1P02458 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.62■□□□□ 0.73
COL2A1P02458 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.62■□□□□ 0.73
COL2A1P02458 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL2A1P02458 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
COL2A1P02458 AC068880.1-201ENST00000507289 2297 ntBASIC19.62■□□□□ 0.73
COL2A1P02458 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.62■□□□□ 0.73
COL2A1P02458 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL2A1P02458 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL2A1P02458 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms