Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 AL662844.4-201ENST00000606367 2838 ntBASIC19.68■□□□□ 0.74
CTDNEP1O95476 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 SLC22A20-204ENST00000530038 1673 ntBASIC19.68■□□□□ 0.74
CTDNEP1O95476 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 PCDH8P1-201ENST00000428983 2773 ntBASIC19.67■□□□□ 0.74
CTDNEP1O95476 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 AC136632.2-201ENST00000512891 861 ntBASIC19.67■□□□□ 0.74
CTDNEP1O95476 RNA5SP419-201ENST00000515908 135 ntBASIC19.67■□□□□ 0.74
CTDNEP1O95476 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 FAM215A-202ENST00000632077 792 ntBASIC19.67■□□□□ 0.74
CTDNEP1O95476 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.67■□□□□ 0.74
CTDNEP1O95476 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTDNEP1O95476 AL671710.1-201ENST00000610245 2349 ntBASIC19.67■□□□□ 0.74
CTDNEP1O95476 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 AP002469.2-201ENST00000531724 424 ntBASIC19.66■□□□□ 0.74
CTDNEP1O95476 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 OR7E47P-204ENST00000575924 449 ntBASIC19.66■□□□□ 0.74
CTDNEP1O95476 MPDU1-223ENST00000582151 728 ntBASIC19.66■□□□□ 0.74
CTDNEP1O95476 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 AC008667.4-201ENST00000607370 168 ntBASIC19.66■□□□□ 0.74
CTDNEP1O95476 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CTDNEP1O95476 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.66■□□□□ 0.74
CTDNEP1O95476 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms