Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.11■□□□□ 0.49
HOXA2O43364 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.11■□□□□ 0.49
HOXA2O43364 IGHV3-42-201ENST00000520410 361 ntBASIC18.11■□□□□ 0.49
HOXA2O43364 AC069120.2-201ENST00000524091 540 ntBASIC18.11■□□□□ 0.49
HOXA2O43364 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HOXA2O43364 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
HOXA2O43364 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXA2O43364 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXA2O43364 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXA2O43364 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.11■□□□□ 0.49
HOXA2O43364 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.11■□□□□ 0.49
HOXA2O43364 AC116353.5-201ENST00000638148 1699 ntBASIC18.11■□□□□ 0.49
HOXA2O43364 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HOXA2O43364 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HOXA2O43364 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXA2O43364 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HOXA2O43364 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HOXA2O43364 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.1■□□□□ 0.49
HOXA2O43364 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
HOXA2O43364 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.1■□□□□ 0.49
HOXA2O43364 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.1■□□□□ 0.49
HOXA2O43364 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.1■□□□□ 0.49
HOXA2O43364 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXA2O43364 CYP2A7P1-201ENST00000595391 815 ntBASIC18.1■□□□□ 0.49
HOXA2O43364 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.1■□□□□ 0.49
HOXA2O43364 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC18.1■□□□□ 0.49
HOXA2O43364 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.1■□□□□ 0.49
HOXA2O43364 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HOXA2O43364 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HOXA2O43364 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HOXA2O43364 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
HOXA2O43364 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.1■□□□□ 0.49
HOXA2O43364 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HOXA2O43364 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXA2O43364 FRMD8P1-201ENST00000440433 1524 ntBASIC18.09■□□□□ 0.49
HOXA2O43364 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.09■□□□□ 0.49
HOXA2O43364 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 FO538757.1-201ENST00000623083 1397 ntBASIC18.09■□□□□ 0.49
HOXA2O43364 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.09■□□□□ 0.49
HOXA2O43364 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
HOXA2O43364 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.09■□□□□ 0.49
HOXA2O43364 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 TREML5P-201ENST00000421694 576 ntBASIC18.09■□□□□ 0.49
HOXA2O43364 STK33P1-201ENST00000423835 1218 ntBASIC18.09■□□□□ 0.49
HOXA2O43364 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.09■□□□□ 0.49
HOXA2O43364 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HOXA2O43364 KRT18P34-201ENST00000488218 1270 ntBASIC18.09■□□□□ 0.49
HOXA2O43364 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.09■□□□□ 0.49
HOXA2O43364 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.09■□□□□ 0.49
HOXA2O43364 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.09■□□□□ 0.49
HOXA2O43364 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HOXA2O43364 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
HOXA2O43364 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HOXA2O43364 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
HOXA2O43364 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.08■□□□□ 0.49
HOXA2O43364 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HOXA2O43364 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
HOXA2O43364 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HOXA2O43364 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
HOXA2O43364 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.08■□□□□ 0.49
HOXA2O43364 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HOXA2O43364 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.08■□□□□ 0.49
HOXA2O43364 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HOXA2O43364 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HOXA2O43364 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.08■□□□□ 0.48
HOXA2O43364 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.08■□□□□ 0.48
HOXA2O43364 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HOXA2O43364 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HOXA2O43364 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.08■□□□□ 0.48
HOXA2O43364 AL512638.1-201ENST00000457493 794 ntBASIC18.08■□□□□ 0.48
HOXA2O43364 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.08■□□□□ 0.48
HOXA2O43364 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HOXA2O43364 TERF1P3-201ENST00000505638 1227 ntBASIC18.08■□□□□ 0.48
HOXA2O43364 AC105233.2-201ENST00000523697 349 ntBASIC18.08■□□□□ 0.48
HOXA2O43364 AF228730.5-201ENST00000530288 346 ntBASIC18.08■□□□□ 0.48
HOXA2O43364 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.08■□□□□ 0.48
HOXA2O43364 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms