Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ALOX12P2-203ENST00000570921 1945 ntBASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 AC091607.1-201ENST00000490318 1060 ntBASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 AC009533.2-201ENST00000543664 586 ntBASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 AC011498.5-201ENST00000592027 486 ntBASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 AD001527.2-201ENST00000622994 785 ntBASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM49D1C9J1S8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 AC073592.5-201ENST00000624854 528 ntBASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM49D1C9J1S8 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM49D1C9J1S8 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM49D1C9J1S8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM49D1C9J1S8 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 AC246785.2-201ENST00000432512 513 ntBASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM49D1C9J1S8 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms