Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TSPY19P-201ENST00000418461 509 ntBASIC13.82□□□□□ -0.2
FOXA2Q9Y261 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 TSPY18P-201ENST00000441642 509 ntBASIC13.82□□□□□ -0.2
FOXA2Q9Y261 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 SDHD-206ENST00000528182 754 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 AC012313.10-201ENST00000623509 926 ntBASIC13.82□□□□□ -0.2
FOXA2Q9Y261 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 FRMD8P1-201ENST00000440433 1524 ntBASIC13.81□□□□□ -0.2
FOXA2Q9Y261 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 AP002490.2-201ENST00000524791 560 ntBASIC13.81□□□□□ -0.2
FOXA2Q9Y261 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.81□□□□□ -0.2
FOXA2Q9Y261 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA2Q9Y261 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 KLF4P1-201ENST00000412782 1185 ntBASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA2Q9Y261 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms