Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC105020.1-201ENST00000435356 2205 ntBASIC18.15■□□□□ 0.5
SIX4Q9UIU6 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 HMGA1P7-201ENST00000406908 502 ntBASIC18.15■□□□□ 0.5
SIX4Q9UIU6 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 BX842568.4-201ENST00000421222 227 ntBASIC18.15■□□□□ 0.5
SIX4Q9UIU6 MCCD1P2-201ENST00000423228 335 ntBASIC18.15■□□□□ 0.5
SIX4Q9UIU6 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 AC092919.2-201ENST00000623631 1645 ntBASIC18.15■□□□□ 0.5
SIX4Q9UIU6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 AC131009.4-201ENST00000624048 1740 ntBASIC18.15■□□□□ 0.5
SIX4Q9UIU6 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SIX4Q9UIU6 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SIX4Q9UIU6 AL645728.1-201ENST00000366221 2101 ntBASIC18.14■□□□□ 0.5
SIX4Q9UIU6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.14■□□□□ 0.5
SIX4Q9UIU6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SIX4Q9UIU6 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SIX4Q9UIU6 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 AC074386.1-202ENST00000463561 864 ntBASIC18.13■□□□□ 0.49
SIX4Q9UIU6 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 AL645728.2-201ENST00000641974 660 ntBASIC18.13■□□□□ 0.49
SIX4Q9UIU6 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 AC012569.1-201ENST00000591191 1524 ntBASIC18.13■□□□□ 0.49
SIX4Q9UIU6 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.13■□□□□ 0.49
SIX4Q9UIU6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 LINC00895-201ENST00000629028 1637 ntBASIC18.12■□□□□ 0.49
SIX4Q9UIU6 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
SIX4Q9UIU6 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms