Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 AC133963.1-201ENST00000504166 1679 ntBASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAIPQ9BWF2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 AL031432.2-201ENST00000566714 459 ntBASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 AL928711.1-201ENST00000570165 459 ntBASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAIPQ9BWF2 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRAIPQ9BWF2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.64■□□□□ 0.58
TRAIPQ9BWF2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAIPQ9BWF2 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 AC106820.2-201ENST00000563775 3264 ntBASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 CEND1P1-201ENST00000451006 455 ntBASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 SNHG9-202ENST00000564014 471 ntBASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms