Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
PAAF1Q9BRP4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 AC106820.2-201ENST00000563775 3264 ntBASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 HCG4-201ENST00000418983 998 ntBASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 AC005237.2-201ENST00000434368 219 ntBASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 AC091167.2-201ENST00000579581 588 ntBASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.07■□□□□ 0.48
PAAF1Q9BRP4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC109635.5-201ENST00000533593 962 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC087641.1-201ENST00000557561 1021 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AL031055.1-201ENST00000606362 631 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC093512.1-201ENST00000617969 520 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 AC092068.3-201ENST00000587894 2016 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 KRT8P49-201ENST00000604166 1432 ntBASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PAAF1Q9BRP4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 AKAP8P1-201ENST00000434743 1349 ntBASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 AC139713.2-201ENST00000641328 2723 ntBASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 RN7SL589P-201ENST00000481268 310 ntBASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 AL161645.1-201ENST00000622716 1255 ntBASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PAAF1Q9BRP4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms