Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.27■□□□□ 0.04
SNRNP40Q96DI7 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.27■□□□□ 0.04
SNRNP40Q96DI7 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.27■□□□□ 0.04
SNRNP40Q96DI7 AC008267.7-201ENST00000624570 1194 ntBASIC15.27■□□□□ 0.04
SNRNP40Q96DI7 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.27■□□□□ 0.04
SNRNP40Q96DI7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
SNRNP40Q96DI7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SNRNP40Q96DI7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 AC092580.3-201ENST00000430932 139 ntBASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 CRB3P1-201ENST00000449338 276 ntBASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 AC027307.3-201ENST00000594262 1100 ntBASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SNRNP40Q96DI7 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AC138028.4-201ENST00000564984 1845 ntBASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AP000842.3-202ENST00000569238 1080 ntBASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AC027307.2-201ENST00000591252 911 ntBASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AL353732.1-201ENST00000569618 1459 ntBASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
SNRNP40Q96DI7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms