Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 SLC25A1P3-201ENST00000395415 828 ntBASIC15.32■□□□□ 0.04
CPNE4Q96A23 PRSS29P-201ENST00000440800 595 ntBASIC15.32■□□□□ 0.04
CPNE4Q96A23 PAWRP1-201ENST00000451083 565 ntBASIC15.32■□□□□ 0.04
CPNE4Q96A23 MIR4751-201ENST00000578027 74 ntBASIC15.32■□□□□ 0.04
CPNE4Q96A23 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 SLC25A1P1-201ENST00000528351 927 ntBASIC15.31■□□□□ 0.04
CPNE4Q96A23 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 AC034105.1-201ENST00000563488 319 ntBASIC15.31■□□□□ 0.04
CPNE4Q96A23 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 AC010654.1-201ENST00000615722 808 ntBASIC15.31■□□□□ 0.04
CPNE4Q96A23 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.31■□□□□ 0.04
CPNE4Q96A23 LINC02012-201ENST00000608206 1725 ntBASIC15.31■□□□□ 0.04
CPNE4Q96A23 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CPNE4Q96A23 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.31■□□□□ 0.04
CPNE4Q96A23 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 AL591424.1-201ENST00000442569 1213 ntBASIC15.3■□□□□ 0.04
CPNE4Q96A23 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CPNE4Q96A23 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CPNE4Q96A23 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms