Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.88■□□□□ 0.61
HPS3Q969F9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.88■□□□□ 0.61
HPS3Q969F9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.88■□□□□ 0.61
HPS3Q969F9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 AC018712.1-201ENST00000455767 687 ntBASIC18.88■□□□□ 0.61
HPS3Q969F9 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.88■□□□□ 0.61
HPS3Q969F9 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.88■□□□□ 0.61
HPS3Q969F9 AL049840.3-201ENST00000602669 611 ntBASIC18.88■□□□□ 0.61
HPS3Q969F9 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.88■□□□□ 0.61
HPS3Q969F9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
HPS3Q969F9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.88■□□□□ 0.61
HPS3Q969F9 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HPS3Q969F9 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.88■□□□□ 0.61
HPS3Q969F9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
HPS3Q969F9 OR6D1P-202ENST00000641007 5290 ntBASIC18.87■□□□□ 0.61
HPS3Q969F9 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
HPS3Q969F9 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 AC073621.1-201ENST00000392730 636 ntBASIC18.87■□□□□ 0.61
HPS3Q969F9 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.87■□□□□ 0.61
HPS3Q969F9 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HPS3Q969F9 AC073648.2-201ENST00000510116 352 ntBASIC18.87■□□□□ 0.61
HPS3Q969F9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.87■□□□□ 0.61
HPS3Q969F9 OR7E14P-202ENST00000530490 1290 ntBASIC18.87■□□□□ 0.61
HPS3Q969F9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.87■□□□□ 0.61
HPS3Q969F9 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
HPS3Q969F9 AP002414.3-201ENST00000589352 1468 ntBASIC18.87■□□□□ 0.61
HPS3Q969F9 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
HPS3Q969F9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.87■□□□□ 0.61
HPS3Q969F9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
HPS3Q969F9 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.86■□□□□ 0.61
HPS3Q969F9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 MRPL3P1-201ENST00000400109 1033 ntBASIC18.86■□□□□ 0.61
HPS3Q969F9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 LAGE3P1-201ENST00000425356 484 ntBASIC18.86■□□□□ 0.61
HPS3Q969F9 KRT18P27-201ENST00000427733 1299 ntBASIC18.86■□□□□ 0.61
HPS3Q969F9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
HPS3Q969F9 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.86■□□□□ 0.61
HPS3Q969F9 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.86■□□□□ 0.61
HPS3Q969F9 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.86■□□□□ 0.61
HPS3Q969F9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HPS3Q969F9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HPS3Q969F9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.86■□□□□ 0.61
HPS3Q969F9 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.86■□□□□ 0.61
HPS3Q969F9 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms