Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 ACTG1P4-201ENST00000425123 1122 ntBASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC54Q8NEL0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AC106886.4-201ENST00000623557 2502 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 TP73-AS1-210ENST00000637775 1455 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AL118508.1-201ENST00000613502 2345 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AL031133.1-201ENST00000406807 723 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 POM121L3P-201ENST00000419331 1163 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 DRAXINP1-201ENST00000437611 948 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 SIGLEC30P-201ENST00000455569 941 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 AC132938.5-201ENST00000624980 1813 ntBASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC54Q8NEL0 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC54Q8NEL0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms