Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HLA-J-203ENST00000494367 1087 ntBASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 AC084018.2-201ENST00000613093 2607 ntBASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 PDPK2P-202ENST00000562415 1191 ntBASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 AC132938.5-201ENST00000624980 1813 ntBASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.48■□□□□ 0.71
SH3RF1Q7Z6J0 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 AC148477.5-201ENST00000625164 1645 ntBASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 AC004449.1-201ENST00000564240 433 ntBASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SH3RF1Q7Z6J0 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 AL020989.1-201ENST00000422979 469 ntBASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 FAM58CP-201ENST00000435741 640 ntBASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.46■□□□□ 0.71
SH3RF1Q7Z6J0 AC138761.1-201ENST00000584393 385 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms