Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PDLIM3Q53GG5 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PDLIM3Q53GG5 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PDLIM3Q53GG5 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PDLIM3Q53GG5 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
PDLIM3Q53GG5 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
PDLIM3Q53GG5 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 UPF3AP3-201ENST00000420996 769 ntBASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 ZNF259P1-201ENST00000407656 1365 ntBASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 BX276092.7-203ENST00000637198 1536 ntBASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.2□□□□□ -0.14
PDLIM3Q53GG5 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 AL118508.1-201ENST00000613502 2345 ntBASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 AKR1C7P-201ENST00000305623 895 ntBASIC14.19□□□□□ -0.14
PDLIM3Q53GG5 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms