Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC092910.1-201ENST00000482027 1129 ntBASIC16.19■□□□□ 0.18
LIM2P55344 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.19■□□□□ 0.18
LIM2P55344 AC093909.1-201ENST00000504731 1122 ntBASIC16.19■□□□□ 0.18
LIM2P55344 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.19■□□□□ 0.18
LIM2P55344 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.19■□□□□ 0.18
LIM2P55344 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 AC243591.1-201ENST00000452967 1364 ntBASIC16.18■□□□□ 0.18
LIM2P55344 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.18■□□□□ 0.18
LIM2P55344 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 AP002414.1-201ENST00000391405 1147 ntBASIC16.18■□□□□ 0.18
LIM2P55344 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 RPS15P9-201ENST00000494093 319 ntBASIC16.18■□□□□ 0.18
LIM2P55344 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.18■□□□□ 0.18
LIM2P55344 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.18■□□□□ 0.18
LIM2P55344 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 AC116407.3-201ENST00000623905 1129 ntBASIC16.18■□□□□ 0.18
LIM2P55344 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 PGM5P2-202ENST00000637225 1043 ntBASIC16.18■□□□□ 0.18
LIM2P55344 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LIM2P55344 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
LIM2P55344 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIM2P55344 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.18■□□□□ 0.18
LIM2P55344 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.18■□□□□ 0.18
LIM2P55344 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
LIM2P55344 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 PI4KAP1-204ENST00000612579 1703 ntBASIC16.17■□□□□ 0.18
LIM2P55344 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIM2P55344 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.17■□□□□ 0.18
LIM2P55344 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.17■□□□□ 0.18
LIM2P55344 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.17■□□□□ 0.18
LIM2P55344 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms