Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
FOXA3P55318 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 ESRRAP1-201ENST00000400596 1257 ntBASIC12.86□□□□□ -0.35
FOXA3P55318 AL355802.2-201ENST00000402069 882 ntBASIC12.86□□□□□ -0.35
FOXA3P55318 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 PVRIG2P-201ENST00000435460 978 ntBASIC12.86□□□□□ -0.35
FOXA3P55318 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 AC073648.6-201ENST00000641589 218 ntBASIC12.86□□□□□ -0.35
FOXA3P55318 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.86□□□□□ -0.35
FOXA3P55318 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
FOXA3P55318 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC12.85□□□□□ -0.35
FOXA3P55318 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
FOXA3P55318 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 SAPCD2P4-201ENST00000424595 1171 ntBASIC12.85□□□□□ -0.35
FOXA3P55318 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC12.85□□□□□ -0.35
FOXA3P55318 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 SEC1P-202ENST00000473944 940 ntBASIC12.85□□□□□ -0.35
FOXA3P55318 C1QBPP2-201ENST00000528754 825 ntBASIC12.85□□□□□ -0.35
FOXA3P55318 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 GRAMD4P8-201ENST00000605465 1115 ntBASIC12.85□□□□□ -0.35
FOXA3P55318 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA3P55318 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA3P55318 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC12.85□□□□□ -0.35
FOXA3P55318 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA3P55318 KRT89P-201ENST00000620027 1478 ntBASIC12.85□□□□□ -0.35
FOXA3P55318 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
FOXA3P55318 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 CRYGFP-201ENST00000418459 633 ntBASIC12.84□□□□□ -0.35
FOXA3P55318 APTR-205ENST00000447009 902 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC12.84□□□□□ -0.35
FOXA3P55318 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms