Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NR1H2P55055 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.24■□□□□ 0.19
NR1H2P55055 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NR1H2P55055 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
NR1H2P55055 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NR1H2P55055 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NR1H2P55055 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
NR1H2P55055 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.24■□□□□ 0.19
NR1H2P55055 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
NR1H2P55055 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
NR1H2P55055 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 AC126177.1-201ENST00000547829 2218 ntBASIC16.23■□□□□ 0.19
NR1H2P55055 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.23■□□□□ 0.19
NR1H2P55055 KRT8P7-201ENST00000533003 1432 ntBASIC16.23■□□□□ 0.19
NR1H2P55055 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 HBZP1-201ENST00000354915 429 ntBASIC16.23■□□□□ 0.19
NR1H2P55055 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.23■□□□□ 0.19
NR1H2P55055 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.23■□□□□ 0.19
NR1H2P55055 HCG4P8-203ENST00000443049 980 ntBASIC16.23■□□□□ 0.19
NR1H2P55055 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.23■□□□□ 0.19
NR1H2P55055 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.23■□□□□ 0.19
NR1H2P55055 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.23■□□□□ 0.19
NR1H2P55055 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.23■□□□□ 0.19
NR1H2P55055 AC024243.1-201ENST00000609234 778 ntBASIC16.23■□□□□ 0.19
NR1H2P55055 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
NR1H2P55055 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.23■□□□□ 0.19
NR1H2P55055 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.23■□□□□ 0.19
NR1H2P55055 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NR1H2P55055 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.23■□□□□ 0.19
NR1H2P55055 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.23■□□□□ 0.19
NR1H2P55055 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
NR1H2P55055 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.22■□□□□ 0.19
NR1H2P55055 AL645929.1-201ENST00000420084 975 ntBASIC16.22■□□□□ 0.19
NR1H2P55055 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.22■□□□□ 0.19
NR1H2P55055 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
NR1H2P55055 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 AC112497.1-201ENST00000624824 639 ntBASIC16.22■□□□□ 0.19
NR1H2P55055 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 AC099343.3-201ENST00000605834 2503 ntBASIC16.22■□□□□ 0.19
NR1H2P55055 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.22■□□□□ 0.19
NR1H2P55055 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
NR1H2P55055 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NR1H2P55055 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms