Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD3P31249 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD3P31249 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD3P31249 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD3P31249 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD3P31249 AL513190.1-201ENST00000621254 727 ntBASIC13.21□□□□□ -0.29
HOXD3P31249 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD3P31249 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HOXD3P31249 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD3P31249 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD3P31249 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD3P31249 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD3P31249 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD3P31249 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD3P31249 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 AC002310.6-201ENST00000624451 1377 ntBASIC13.2□□□□□ -0.3
HOXD3P31249 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HOXD3P31249 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD3P31249 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXD3P31249 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD3P31249 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 CROCCP2-202ENST00000412962 2773 ntBASIC13.2□□□□□ -0.3
HOXD3P31249 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HOXD3P31249 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
HOXD3P31249 VN2R19P-201ENST00000442399 1052 ntBASIC13.2□□□□□ -0.3
HOXD3P31249 AP006288.1-201ENST00000446065 395 ntBASIC13.2□□□□□ -0.3
HOXD3P31249 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXD3P31249 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 AC008667.4-201ENST00000607370 168 ntBASIC13.2□□□□□ -0.3
HOXD3P31249 AC004790.2-201ENST00000623588 572 ntBASIC13.2□□□□□ -0.3
HOXD3P31249 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXD3P31249 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD3P31249 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD3P31249 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HOXD3P31249 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD3P31249 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD3P31249 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 PI4KAP1-204ENST00000612579 1703 ntBASIC13.19□□□□□ -0.3
HOXD3P31249 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXD3P31249 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXD3P31249 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXD3P31249 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.19□□□□□ -0.3
HOXD3P31249 IGHV3-65-201ENST00000523210 341 ntBASIC13.19□□□□□ -0.3
HOXD3P31249 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXD3P31249 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD3P31249 WAC-202ENST00000347934 2839 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD3P31249 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD3P31249 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms