Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 BX323043.1-201ENST00000641006 1765 ntBASIC20.18■□□□□ 0.82
COL4A5P29400 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A5P29400 MIR658-201ENST00000385210 100 ntBASIC20.17■□□□□ 0.82
COL4A5P29400 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A5P29400 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.17■□□□□ 0.82
COL4A5P29400 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.17■□□□□ 0.82
COL4A5P29400 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.17■□□□□ 0.82
COL4A5P29400 AP001350.2-201ENST00000625104 1094 ntBASIC20.17■□□□□ 0.82
COL4A5P29400 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 ABALON-201ENST00000629058 1903 ntBASIC20.17■□□□□ 0.82
COL4A5P29400 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.17■□□□□ 0.82
COL4A5P29400 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL4A5P29400 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
COL4A5P29400 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A5P29400 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL4A5P29400 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.16■□□□□ 0.82
COL4A5P29400 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
COL4A5P29400 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL4A5P29400 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A5P29400 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A5P29400 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 BICD1-207ENST00000551848 1962 ntBASIC20.16■□□□□ 0.82
COL4A5P29400 SPDYE19P-201ENST00000338590 713 ntBASIC20.16■□□□□ 0.82
COL4A5P29400 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.16■□□□□ 0.82
COL4A5P29400 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL4A5P29400 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC20.16■□□□□ 0.82
COL4A5P29400 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.16■□□□□ 0.82
COL4A5P29400 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
COL4A5P29400 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 SLC7A15P-201ENST00000424028 1363 ntBASIC20.15■□□□□ 0.82
COL4A5P29400 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A5P29400 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A5P29400 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.15■□□□□ 0.82
COL4A5P29400 MIR6805-201ENST00000615055 62 ntBASIC20.15■□□□□ 0.82
COL4A5P29400 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A5P29400 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A5P29400 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
COL4A5P29400 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.15■□□□□ 0.82
COL4A5P29400 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.82
COL4A5P29400 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A5P29400 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A5P29400 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A5P29400 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
COL4A5P29400 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.14■□□□□ 0.81
COL4A5P29400 AC093525.9-201ENST00000624961 1746 ntBASIC20.14■□□□□ 0.81
COL4A5P29400 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL4A5P29400 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.14■□□□□ 0.81
COL4A5P29400 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.14■□□□□ 0.81
COL4A5P29400 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.14■□□□□ 0.81
COL4A5P29400 KRT17P8-201ENST00000540749 863 ntBASIC20.14■□□□□ 0.81
COL4A5P29400 AC044860.1-202ENST00000559481 777 ntBASIC20.14■□□□□ 0.81
COL4A5P29400 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.14■□□□□ 0.81
COL4A5P29400 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.14■□□□□ 0.81
COL4A5P29400 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A5P29400 BTBD7P1-201ENST00000447253 1453 ntBASIC20.13■□□□□ 0.81
COL4A5P29400 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A5P29400 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
COL4A5P29400 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A5P29400 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A5P29400 AC106886.1-201ENST00000568660 600 ntBASIC20.13■□□□□ 0.81
COL4A5P29400 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A5P29400 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms