Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN4P29074 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN4P29074 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
PTPN4P29074 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.18■□□□□ 0.34
PTPN4P29074 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN4P29074 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.18■□□□□ 0.34
PTPN4P29074 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.18■□□□□ 0.34
PTPN4P29074 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.18■□□□□ 0.34
PTPN4P29074 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.18■□□□□ 0.34
PTPN4P29074 AC011840.4-201ENST00000578471 627 ntBASIC17.18■□□□□ 0.34
PTPN4P29074 AC104692.2-201ENST00000603054 253 ntBASIC17.18■□□□□ 0.34
PTPN4P29074 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN4P29074 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN4P29074 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.18■□□□□ 0.34
PTPN4P29074 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN4P29074 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PTPN4P29074 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 AC132872.4-202ENST00000622924 2756 ntBASIC17.17■□□□□ 0.34
PTPN4P29074 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PTPN4P29074 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
PTPN4P29074 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 AC079781.3-201ENST00000449110 356 ntBASIC17.17■□□□□ 0.34
PTPN4P29074 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 AC009078.2-202ENST00000463353 338 ntBASIC17.17■□□□□ 0.34
PTPN4P29074 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.17■□□□□ 0.34
PTPN4P29074 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
PTPN4P29074 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.17■□□□□ 0.34
PTPN4P29074 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 AL353801.3-201ENST00000609898 542 ntBASIC17.17■□□□□ 0.34
PTPN4P29074 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PTPN4P29074 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.17■□□□□ 0.34
PTPN4P29074 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
PTPN4P29074 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.17■□□□□ 0.34
PTPN4P29074 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTPN4P29074 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.16■□□□□ 0.34
PTPN4P29074 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTPN4P29074 NSUN5P1-202ENST00000421140 1535 ntBASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms