Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AL662844.4-201ENST00000606367 2838 ntBASIC13.04□□□□□ -0.32
HLA-DMBP28068 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AP002414.4-201ENST00000589764 1148 ntBASIC13.04□□□□□ -0.32
HLA-DMBP28068 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AC132938.5-201ENST00000624980 1813 ntBASIC13.04□□□□□ -0.32
HLA-DMBP28068 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
HLA-DMBP28068 AL353593.2-201ENST00000602529 1483 ntBASIC13.04□□□□□ -0.32
HLA-DMBP28068 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
HLA-DMBP28068 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 AC009336.1-201ENST00000608941 1553 ntBASIC13.03□□□□□ -0.32
HLA-DMBP28068 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 DUSP5P1-201ENST00000441325 1139 ntBASIC13.03□□□□□ -0.32
HLA-DMBP28068 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 PRELID1P1-202ENST00000567272 903 ntBASIC13.03□□□□□ -0.32
HLA-DMBP28068 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HLA-DMBP28068 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.03□□□□□ -0.32
HLA-DMBP28068 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms