Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.99■□□□□ 0.31
MSH3P20585 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 RNA5SP419-201ENST00000515908 135 ntBASIC16.99■□□□□ 0.31
MSH3P20585 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.99■□□□□ 0.31
MSH3P20585 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH3P20585 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH3P20585 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
MSH3P20585 LINC02012-201ENST00000608206 1725 ntBASIC16.99■□□□□ 0.31
MSH3P20585 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
MSH3P20585 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
MSH3P20585 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 AC084018.2-201ENST00000613093 2607 ntBASIC16.98■□□□□ 0.31
MSH3P20585 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 AC073621.1-201ENST00000392730 636 ntBASIC16.98■□□□□ 0.31
MSH3P20585 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 PTCHD3P3-201ENST00000403073 906 ntBASIC16.98■□□□□ 0.31
MSH3P20585 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.98■□□□□ 0.31
MSH3P20585 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.98■□□□□ 0.31
MSH3P20585 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH3P20585 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.98■□□□□ 0.31
MSH3P20585 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
MSH3P20585 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH3P20585 AC116407.3-201ENST00000623905 1129 ntBASIC16.98■□□□□ 0.31
MSH3P20585 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH3P20585 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
MSH3P20585 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH3P20585 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.97■□□□□ 0.31
MSH3P20585 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.97■□□□□ 0.31
MSH3P20585 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.97■□□□□ 0.31
MSH3P20585 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.97■□□□□ 0.31
MSH3P20585 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.97■□□□□ 0.31
MSH3P20585 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.97■□□□□ 0.31
MSH3P20585 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
MSH3P20585 AL805961.1-202ENST00000641562 540 ntBASIC16.97■□□□□ 0.31
MSH3P20585 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MSH3P20585 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.97■□□□□ 0.31
MSH3P20585 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms