Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 AC141586.5-201ENST00000624546 2050 ntBASIC17.56■□□□□ 0.4
HMGA1P17096 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGA1P17096 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 KRT18P32-201ENST00000424695 1287 ntBASIC17.56■□□□□ 0.4
HMGA1P17096 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGA1P17096 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGA1P17096 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HMGA1P17096 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HMGA1P17096 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HMGA1P17096 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGA1P17096 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.55■□□□□ 0.4
HMGA1P17096 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HMGA1P17096 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.55■□□□□ 0.4
HMGA1P17096 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.55■□□□□ 0.4
HMGA1P17096 AC015911.4-201ENST00000588022 1070 ntBASIC17.55■□□□□ 0.4
HMGA1P17096 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.55■□□□□ 0.4
HMGA1P17096 AC093512.1-201ENST00000617969 520 ntBASIC17.55■□□□□ 0.4
HMGA1P17096 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HMGA1P17096 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HMGA1P17096 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 AC016027.1-202ENST00000607927 1699 ntBASIC17.55■□□□□ 0.4
HMGA1P17096 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGA1P17096 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HMGA1P17096 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGA1P17096 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGA1P17096 LINC00895-201ENST00000629028 1637 ntBASIC17.54■□□□□ 0.4
HMGA1P17096 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGA1P17096 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
HMGA1P17096 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGA1P17096 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGA1P17096 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.54■□□□□ 0.4
HMGA1P17096 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.54■□□□□ 0.4
HMGA1P17096 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 AL512356.2-201ENST00000546955 174 ntBASIC17.54■□□□□ 0.4
HMGA1P17096 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms