Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.1■□□□□ 0.81
HMGB1P09429 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
HMGB1P09429 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
HMGB1P09429 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.1■□□□□ 0.81
HMGB1P09429 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
HMGB1P09429 RNF216P1-203ENST00000404404 2427 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 AC004870.1-201ENST00000315132 882 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.1■□□□□ 0.81
HMGB1P09429 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGB1P09429 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.1■□□□□ 0.81
HMGB1P09429 AC018712.1-201ENST00000455767 687 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGB1P09429 AF186996.4-201ENST00000467186 377 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGB1P09429 RN7SL510P-201ENST00000581311 263 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGB1P09429 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 TP73-AS1-207ENST00000624167 988 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB1P09429 PI4KAP1-204ENST00000612579 1703 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.1■□□□□ 0.81
HMGB1P09429 FLJ38576-201ENST00000623820 2459 ntBASIC20.1■□□□□ 0.81
HMGB1P09429 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
HMGB1P09429 AL645728.1-201ENST00000366221 2101 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 TOP3BP1-201ENST00000420768 1380 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.09■□□□□ 0.81
HMGB1P09429 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HMGB1P09429 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 AC073621.1-201ENST00000392730 636 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 KRT18P67-201ENST00000432816 1264 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 AC136632.2-201ENST00000512891 861 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.09■□□□□ 0.81
HMGB1P09429 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.09■□□□□ 0.81
HMGB1P09429 GGTLC5P-201ENST00000617623 998 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 AC008735.5-201ENST00000623544 497 ntBASIC20.09■□□□□ 0.81
HMGB1P09429 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB1P09429 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HMGB1P09429 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
HMGB1P09429 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.08■□□□□ 0.81
HMGB1P09429 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.08■□□□□ 0.81
HMGB1P09429 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.08■□□□□ 0.81
HMGB1P09429 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.08■□□□□ 0.81
HMGB1P09429 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.08■□□□□ 0.81
HMGB1P09429 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.08■□□□□ 0.81
HMGB1P09429 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.08■□□□□ 0.81
HMGB1P09429 AC087163.2-201ENST00000457299 853 ntBASIC20.08■□□□□ 0.81
HMGB1P09429 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.08■□□□□ 0.81
HMGB1P09429 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB1P09429 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.08■□□□□ 0.81
HMGB1P09429 AL691432.3-201ENST00000621860 400 ntBASIC20.08■□□□□ 0.81
HMGB1P09429 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
HMGB1P09429 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.08■□□□□ 0.8
HMGB1P09429 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
HMGB1P09429 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms