Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.19■□□□□ 0.34
VIMP08670 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.19■□□□□ 0.34
VIMP08670 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.19■□□□□ 0.34
VIMP08670 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC17.19■□□□□ 0.34
VIMP08670 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.19■□□□□ 0.34
VIMP08670 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.19■□□□□ 0.34
VIMP08670 CD99P1-205ENST00000527459 561 ntBASIC17.19■□□□□ 0.34
VIMP08670 C1QBPP2-201ENST00000528754 825 ntBASIC17.19■□□□□ 0.34
VIMP08670 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.19■□□□□ 0.34
VIMP08670 FAM197Y4-202ENST00000622692 608 ntBASIC17.19■□□□□ 0.34
VIMP08670 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.19■□□□□ 0.34
VIMP08670 AC073648.6-201ENST00000641589 218 ntBASIC17.19■□□□□ 0.34
VIMP08670 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.19■□□□□ 0.34
VIMP08670 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.19■□□□□ 0.34
VIMP08670 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VIMP08670 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VIMP08670 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.19■□□□□ 0.34
VIMP08670 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VIMP08670 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 SLC25A1P2-201ENST00000430693 912 ntBASIC17.18■□□□□ 0.34
VIMP08670 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.18■□□□□ 0.34
VIMP08670 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.18■□□□□ 0.34
VIMP08670 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.18■□□□□ 0.34
VIMP08670 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VIMP08670 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
VIMP08670 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.18■□□□□ 0.34
VIMP08670 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VIMP08670 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VIMP08670 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
VIMP08670 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.17■□□□□ 0.34
VIMP08670 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VIMP08670 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.17■□□□□ 0.34
VIMP08670 FAM201B-201ENST00000458407 597 ntBASIC17.17■□□□□ 0.34
VIMP08670 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VIMP08670 NUDT16P1-203ENST00000513809 620 ntBASIC17.17■□□□□ 0.34
VIMP08670 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
VIMP08670 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 AP001412.1-201ENST00000608405 714 ntBASIC17.17■□□□□ 0.34
VIMP08670 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VIMP08670 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms