Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 TSEN15P1-201ENST00000423257 515 ntBASIC22.29■■□□□ 1.16
COL3A1P02461 PMS2P2-201ENST00000425039 1128 ntBASIC22.29■■□□□ 1.16
COL3A1P02461 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC22.29■■□□□ 1.16
COL3A1P02461 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
COL3A1P02461 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL3A1P02461 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL3A1P02461 NARF-206ENST00000457415 1668 ntTSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC22.29■■□□□ 1.16
COL3A1P02461 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC22.29■■□□□ 1.16
COL3A1P02461 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC22.29■■□□□ 1.16
COL3A1P02461 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC22.29■■□□□ 1.16
COL3A1P02461 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL3A1P02461 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
COL3A1P02461 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
COL3A1P02461 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC22.29■■□□□ 1.16
COL3A1P02461 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC22.28■■□□□ 1.16
COL3A1P02461 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.28■■□□□ 1.16
COL3A1P02461 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC22.28■■□□□ 1.16
COL3A1P02461 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC22.28■■□□□ 1.16
COL3A1P02461 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC22.28■■□□□ 1.16
COL3A1P02461 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.28■■□□□ 1.16
COL3A1P02461 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC22.28■■□□□ 1.16
COL3A1P02461 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 AL391256.1-201ENST00000443260 1855 ntBASIC22.28■■□□□ 1.16
COL3A1P02461 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
COL3A1P02461 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL3A1P02461 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 AL512652.2-201ENST00000625156 1716 ntBASIC22.28■■□□□ 1.16
COL3A1P02461 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL3A1P02461 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL3A1P02461 AC142381.1-201ENST00000426099 345 ntBASIC22.28■■□□□ 1.16
COL3A1P02461 FAM58DP-201ENST00000428076 619 ntBASIC22.28■■□□□ 1.16
COL3A1P02461 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC22.28■■□□□ 1.16
COL3A1P02461 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.28■■□□□ 1.16
COL3A1P02461 AC021097.1-201ENST00000607902 574 ntBASIC22.28■■□□□ 1.16
COL3A1P02461 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 KRT8P39-201ENST00000396270 1433 ntBASIC22.27■■□□□ 1.16
COL3A1P02461 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
COL3A1P02461 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
COL3A1P02461 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC22.27■■□□□ 1.16
COL3A1P02461 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL3A1P02461 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 AC109322.1-201ENST00000524499 1264 ntBASIC22.27■■□□□ 1.16
COL3A1P02461 SSH2-211ENST00000590153 570 ntTSL 4 BASIC22.27■■□□□ 1.16
COL3A1P02461 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC22.27■■□□□ 1.16
COL3A1P02461 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC22.27■■□□□ 1.16
COL3A1P02461 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
COL3A1P02461 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.15
COL3A1P02461 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.15
COL3A1P02461 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
COL3A1P02461 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
COL3A1P02461 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC22.27■■□□□ 1.15
COL3A1P02461 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC22.27■■□□□ 1.15
COL3A1P02461 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
COL3A1P02461 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC22.26■■□□□ 1.15
COL3A1P02461 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL3A1P02461 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
COL3A1P02461 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL3A1P02461 RNF216P1-203ENST00000404404 2427 ntBASIC22.26■■□□□ 1.15
COL3A1P02461 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC22.26■■□□□ 1.15
COL3A1P02461 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
COL3A1P02461 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL3A1P02461 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms