Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.54■□□□□ 0.24
LDLRP01130 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.54■□□□□ 0.24
LDLRP01130 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 PMS2P7-201ENST00000506558 1336 ntBASIC16.53■□□□□ 0.24
LDLRP01130 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
LDLRP01130 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LDLRP01130 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
LDLRP01130 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.53■□□□□ 0.24
LDLRP01130 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.53■□□□□ 0.24
LDLRP01130 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
LDLRP01130 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.53■□□□□ 0.24
LDLRP01130 AP003733.1-201ENST00000491725 852 ntBASIC16.53■□□□□ 0.24
LDLRP01130 RNPS1P1-201ENST00000507437 918 ntBASIC16.53■□□□□ 0.24
LDLRP01130 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 AC106730.1-201ENST00000566722 1090 ntBASIC16.53■□□□□ 0.24
LDLRP01130 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.53■□□□□ 0.24
LDLRP01130 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.53■□□□□ 0.24
LDLRP01130 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LDLRP01130 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LDLRP01130 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.53■□□□□ 0.24
LDLRP01130 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LDLRP01130 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.53■□□□□ 0.24
LDLRP01130 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.52■□□□□ 0.24
LDLRP01130 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LDLRP01130 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
LDLRP01130 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.52■□□□□ 0.24
LDLRP01130 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 AL031284.1-201ENST00000419297 478 ntBASIC16.52■□□□□ 0.24
LDLRP01130 BX842568.4-201ENST00000421222 227 ntBASIC16.52■□□□□ 0.24
LDLRP01130 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.52■□□□□ 0.24
LDLRP01130 FAM197Y8-203ENST00000450145 560 ntBASIC16.52■□□□□ 0.24
LDLRP01130 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.52■□□□□ 0.24
LDLRP01130 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.52■□□□□ 0.24
LDLRP01130 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.52■□□□□ 0.24
LDLRP01130 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.52■□□□□ 0.24
LDLRP01130 AC008687.5-201ENST00000593746 558 ntBASIC16.52■□□□□ 0.24
LDLRP01130 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.52■□□□□ 0.24
LDLRP01130 AC008741.2-201ENST00000612792 3115 ntBASIC16.52■□□□□ 0.24
LDLRP01130 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.52■□□□□ 0.24
LDLRP01130 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LDLRP01130 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.52■□□□□ 0.23
LDLRP01130 AC116353.5-201ENST00000638148 1699 ntBASIC16.52■□□□□ 0.23
LDLRP01130 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
LDLRP01130 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
LDLRP01130 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.52■□□□□ 0.23
LDLRP01130 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms