Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RPS15P9-201ENST00000494093 319 ntBASIC19.71■□□□□ 0.75
CTDNEP1O95476 AC006557.2-201ENST00000592985 1240 ntBASIC19.71■□□□□ 0.75
CTDNEP1O95476 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 AC006277.1-201ENST00000624348 1610 ntBASIC19.71■□□□□ 0.75
CTDNEP1O95476 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 AP002414.3-201ENST00000589352 1468 ntBASIC19.71■□□□□ 0.75
CTDNEP1O95476 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDNEP1O95476 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CTDNEP1O95476 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 TOP3BP1-201ENST00000420768 1380 ntBASIC19.7■□□□□ 0.74
CTDNEP1O95476 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 AC073648.2-201ENST00000510116 352 ntBASIC19.7■□□□□ 0.74
CTDNEP1O95476 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 AC107918.2-201ENST00000530817 355 ntBASIC19.7■□□□□ 0.74
CTDNEP1O95476 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 AC013467.2-201ENST00000605472 835 ntBASIC19.7■□□□□ 0.74
CTDNEP1O95476 AC008735.5-201ENST00000623544 497 ntBASIC19.7■□□□□ 0.74
CTDNEP1O95476 AF228730.7-201ENST00000641842 219 ntBASIC19.7■□□□□ 0.74
CTDNEP1O95476 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDNEP1O95476 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.7■□□□□ 0.74
CTDNEP1O95476 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 AL450487.1-201ENST00000426799 995 ntBASIC19.69■□□□□ 0.74
CTDNEP1O95476 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 MIR4492-201ENST00000581627 80 ntBASIC19.69■□□□□ 0.74
CTDNEP1O95476 AL049840.3-201ENST00000602669 611 ntBASIC19.69■□□□□ 0.74
CTDNEP1O95476 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDNEP1O95476 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDNEP1O95476 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 ALOX12P2-203ENST00000570921 1945 ntBASIC19.68■□□□□ 0.74
CTDNEP1O95476 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTDNEP1O95476 KRT18P67-201ENST00000432816 1264 ntBASIC19.68■□□□□ 0.74
CTDNEP1O95476 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 AP002490.2-201ENST00000524791 560 ntBASIC19.68■□□□□ 0.74
CTDNEP1O95476 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.68■□□□□ 0.74
CTDNEP1O95476 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms