Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.64■□□□□ 0.25
SDC3O75056 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 Z92544.3-201ENST00000624747 417 ntBASIC16.64■□□□□ 0.25
SDC3O75056 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 AL354751.1-201ENST00000412768 1863 ntBASIC16.63■□□□□ 0.25
SDC3O75056 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 TFAMP1-201ENST00000412727 736 ntBASIC16.63■□□□□ 0.25
SDC3O75056 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 FAM86C2P-203ENST00000528684 1004 ntBASIC16.63■□□□□ 0.25
SDC3O75056 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.63■□□□□ 0.25
SDC3O75056 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 DUX4L17-201ENST00000557360 1267 ntBASIC16.63■□□□□ 0.25
SDC3O75056 AL135744.1-201ENST00000565098 629 ntBASIC16.63■□□□□ 0.25
SDC3O75056 MIR4515-201ENST00000584082 81 ntBASIC16.63■□□□□ 0.25
SDC3O75056 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC3O75056 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SDC3O75056 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC3O75056 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SDC3O75056 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SDC3O75056 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SDC3O75056 AC018470.1-201ENST00000624790 3129 ntBASIC16.62■□□□□ 0.25
SDC3O75056 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC3O75056 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC3O75056 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC3O75056 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SDC3O75056 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.62■□□□□ 0.25
SDC3O75056 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 KRT18P32-201ENST00000424695 1287 ntBASIC16.62■□□□□ 0.25
SDC3O75056 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.62■□□□□ 0.25
SDC3O75056 DUX4L27-201ENST00000554796 1261 ntBASIC16.62■□□□□ 0.25
SDC3O75056 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.62■□□□□ 0.25
SDC3O75056 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
SDC3O75056 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC3O75056 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC3O75056 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC3O75056 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
SDC3O75056 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms