Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MYCLP1-201ENST00000372451 1075 ntBASIC15.03■□□□□ -0
LMX1BO60663 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.03■□□□□ -0
LMX1BO60663 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.03■□□□□ -0
LMX1BO60663 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.03■□□□□ -0
LMX1BO60663 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.03■□□□□ -0
LMX1BO60663 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.03■□□□□ -0
LMX1BO60663 RNPS1P1-201ENST00000507437 918 ntBASIC15.03■□□□□ -0
LMX1BO60663 AC096582.2-201ENST00000510860 516 ntBASIC15.03■□□□□ -0
LMX1BO60663 RNA5SP419-201ENST00000515908 135 ntBASIC15.03■□□□□ -0
LMX1BO60663 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.03■□□□□ -0
LMX1BO60663 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LMX1BO60663 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.03■□□□□ -0
LMX1BO60663 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LMX1BO60663 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.02■□□□□ -0
LMX1BO60663 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.02■□□□□ -0
LMX1BO60663 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
LMX1BO60663 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC15.02■□□□□ -0
LMX1BO60663 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.02■□□□□ -0
LMX1BO60663 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.02■□□□□ -0
LMX1BO60663 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.02■□□□□ -0
LMX1BO60663 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.02■□□□□ -0
LMX1BO60663 SLC25A1P1-201ENST00000528351 927 ntBASIC15.02■□□□□ -0
LMX1BO60663 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
LMX1BO60663 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.02■□□□□ -0
LMX1BO60663 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.02■□□□□ -0
LMX1BO60663 AC008608.2-201ENST00000606089 416 ntBASIC15.02■□□□□ -0
LMX1BO60663 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.02□□□□□ -0.01
LMX1BO60663 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.02□□□□□ -0.01
LMX1BO60663 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
LMX1BO60663 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.02□□□□□ -0.01
LMX1BO60663 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.02□□□□□ -0.01
LMX1BO60663 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LMX1BO60663 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
LMX1BO60663 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LMX1BO60663 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
LMX1BO60663 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.01□□□□□ -0.01
LMX1BO60663 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LMX1BO60663 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.01□□□□□ -0.01
LMX1BO60663 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 MIR1233-2-201ENST00000408138 82 ntBASIC15.01□□□□□ -0.01
LMX1BO60663 MIR1233-1-201ENST00000408722 82 ntBASIC15.01□□□□□ -0.01
LMX1BO60663 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.01□□□□□ -0.01
LMX1BO60663 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.01□□□□□ -0.01
LMX1BO60663 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
LMX1BO60663 AC122714.2-201ENST00000502787 707 ntBASIC15.01□□□□□ -0.01
LMX1BO60663 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.01□□□□□ -0.01
LMX1BO60663 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LMX1BO60663 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.01□□□□□ -0.01
LMX1BO60663 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.01□□□□□ -0.01
LMX1BO60663 STK25P1-201ENST00000585406 838 ntBASIC15.01□□□□□ -0.01
LMX1BO60663 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms