Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.3■□□□□ 0.04
ZIC3O60481 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.3■□□□□ 0.04
ZIC3O60481 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ZIC3O60481 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.3■□□□□ 0.04
ZIC3O60481 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ZIC3O60481 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 BX842568.4-201ENST00000421222 227 ntBASIC15.3■□□□□ 0.04
ZIC3O60481 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.3■□□□□ 0.04
ZIC3O60481 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.3■□□□□ 0.04
ZIC3O60481 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.3■□□□□ 0.04
ZIC3O60481 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.3■□□□□ 0.04
ZIC3O60481 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.3■□□□□ 0.04
ZIC3O60481 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.3■□□□□ 0.04
ZIC3O60481 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.3■□□□□ 0.04
ZIC3O60481 PDPK2P-202ENST00000562415 1191 ntBASIC15.3■□□□□ 0.04
ZIC3O60481 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.3■□□□□ 0.04
ZIC3O60481 AL353732.1-201ENST00000569618 1459 ntBASIC15.3■□□□□ 0.04
ZIC3O60481 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ZIC3O60481 MPDU1-223ENST00000582151 728 ntBASIC15.3■□□□□ 0.04
ZIC3O60481 MIR4515-201ENST00000584082 81 ntBASIC15.3■□□□□ 0.04
ZIC3O60481 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.3■□□□□ 0.04
ZIC3O60481 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZIC3O60481 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
ZIC3O60481 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ZIC3O60481 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
ZIC3O60481 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ZIC3O60481 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ZIC3O60481 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 SLC22A20-204ENST00000530038 1673 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.29■□□□□ 0.04
ZIC3O60481 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 TUBB8P12-201ENST00000308911 1335 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ZIC3O60481 TUBB7P-202ENST00000428444 1305 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 TUBB8P7-204ENST00000567960 1332 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 AC074386.1-202ENST00000463561 864 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 AC092865.5-201ENST00000545435 363 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.29■□□□□ 0.04
ZIC3O60481 MTDHP5-201ENST00000598980 586 ntBASIC15.29■□□□□ 0.04
ZIC3O60481 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.29■□□□□ 0.04
ZIC3O60481 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.29■□□□□ 0.04
ZIC3O60481 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZIC3O60481 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ZIC3O60481 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.28■□□□□ 0.04
ZIC3O60481 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
ZIC3O60481 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.28■□□□□ 0.04
ZIC3O60481 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.28■□□□□ 0.04
ZIC3O60481 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 AC091167.2-201ENST00000579581 588 ntBASIC15.28■□□□□ 0.04
ZIC3O60481 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.28■□□□□ 0.04
ZIC3O60481 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.28■□□□□ 0.04
ZIC3O60481 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.28■□□□□ 0.04
ZIC3O60481 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.28■□□□□ 0.04
ZIC3O60481 AL645728.2-201ENST00000641974 660 ntBASIC15.28■□□□□ 0.04
ZIC3O60481 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZIC3O60481 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms