Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
LIMD1Q9UGP4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC129492.6-201ENST00000611383 1305 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC107890.1-201ENST00000422478 521 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 SLC25A6P2-201ENST00000497974 877 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 LINC02560-201ENST00000596379 459 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AP000997.3-201ENST00000623333 2250 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AC073592.3-201ENST00000625118 1834 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 FO538757.1-201ENST00000623083 1397 ntBASIC17.79■□□□□ 0.44
LIMD1Q9UGP4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 RBPMS2P1-201ENST00000437762 623 ntBASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 GAPDHP21-201ENST00000450301 1010 ntBASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMD1Q9UGP4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AC067852.2-201ENST00000590513 2313 ntBASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 RN7SL589P-201ENST00000481268 310 ntBASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 AC125807.1-201ENST00000483097 614 ntBASIC17.77■□□□□ 0.44
LIMD1Q9UGP4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms