Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LRRC40Q9H9A6 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRRC40Q9H9A6 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.33■□□□□ 0.37
LRRC40Q9H9A6 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AL590787.1-201ENST00000568856 1315 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AP002414.1-201ENST00000391405 1147 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AP002490.2-201ENST00000524791 560 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 LINC01711-201ENST00000598340 967 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AC008608.2-201ENST00000606089 416 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AL589182.2-201ENST00000619332 1049 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 REXO1L6P-202ENST00000619970 1078 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AC078925.2-201ENST00000624013 1973 ntBASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
LRRC40Q9H9A6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 RNF216P1-203ENST00000404404 2427 ntBASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LRRC40Q9H9A6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms